5H08	Hydrolase Hydrolase Inhibitor	date	Oct 04, 2016
title	Human Ptprz D1 Domain Complexed With Naz2329
authors	H.Sugawara
compound		source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Zeta Chain: A Fragment: Unp Residues 1698-1993 Synonym: R-Ptp-Zeta,Protein-Tyrosine Phosphatase Receptor T Polypeptide 1,Protein-Tyrosine Phosphatase Receptor Type Z Polypeptide 2,R-Ptp-Zeta-2; Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptprz1, Htpzp2, Ptprz, Ptprz2, Ptpz Expression_system: Bombyx Mori Expression_system_taxid: 7091
symmetry	Space Group: P 21 21 21	R_factor 0.210 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.776 72.306 90.796 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.53 Å
ligand	7WL	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Targeting PTPRZ inhibits stem cell-like properties and tumorigenicity in glioblastoma cells., Fujikawa A, Sugawara H, Tanaka T, Matsumoto M, Kuboyama K, Suzuki R, Tanga N, Ogata A, Masumura M, Noda M, Sci Rep. 2017 Jul 17;7(1):5609. doi: 10.1038/s41598-017-05931-8. PMID:28717188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (5h08.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 5H08 CSU: Contacts of Structural Units for 5H08 Structure Factors (336 Kb) Retrieve 5H08 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5H08 from S2C, [Save to disk] Re-refined 5h08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5H08 in 3D

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Visual 3D analysis of 5H08

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5h08_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5H08

Community annotation for 5H08 at PDBWiki (http://pdbwiki.org)

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