5H1B Dna Binding Protein Dna date Oct 08, 2016
title Human Rad51 Presynaptic Complex
authors J.Xu, L.Zhao, Y.Xu, W.Zhao, P.Sung, H.W.Wang
compound source
Molecule: Dna Repair Protein Rad51 Homolog 1
Chain: A, B, C
Synonym: Hrad51,Rad51 Homolog A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rad51, Rad51a, Reca
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Dna (5'-D(Ptptptptptptptptpt)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCryo-EM structures of human RAD51 recombinase filaments during catalysis of DNA-strand exchange., Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW, Nat Struct Mol Biol. 2017 Jan;24(1):40-46. doi: 10.1038/nsmb.3336. Epub 2016 Dec , 12. PMID:27941862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5h1b.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 5H1B
  • CSU: Contacts of Structural Units for 5H1B
  • Retrieve 5H1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H1B from S2C, [Save to disk]
  • View 5H1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H1B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h1b_D] [5h1b_B] [5h1b_A] [5h1b_C] [5h1b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H1B
  • Community annotation for 5H1B at PDBWiki (http://pdbwiki.org)

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