5H5T Structural Protein date Nov 09, 2016
title Crystal Structure Of The Flagellar Cap Protein Flid D2-D3 Do Salmonella Typhimurium
authors W.S.Song, S.Y.Cho, H.J.Hong, S.I.Yoon
compound source
Molecule: Flagellar Hook-Associated Protein 2
Chain: A, B, C, D, E
Fragment: Unp Residues 71-268
Synonym: Hap2,Flagellar Cap Protein
Engineered: Yes
 Organism_scientific: Salmonella Typhimurium
Organism_taxid: 90371
Gene: Flid
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.688 106.062 141.704 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceSelf-Oligomerizing Structure of the Flagellar Cap Protein FliD and Its Implication in Filament Assembly., Song WS, Cho SY, Hong HJ, Park SC, Yoon SI, J Mol Biol. 2017 Feb 6. pii: S0022-2836(17)30065-7. doi:, 10.1016/j.jmb.2017.02.001. PMID:28179186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (5h5t.pdb1.gz) 292 Kb
  • CSU: Contacts of Structural Units for 5H5T
  • Structure Factors (608 Kb)
  • Retrieve 5H5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H5T from S2C, [Save to disk]
  • Re-refined 5h5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H5T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h5t_D] [5h5t_C] [5h5t_B] [5h5t] [5h5t_E] [5h5t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H5T
  • Community annotation for 5H5T at PDBWiki (http://pdbwiki.org)

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