5H7S	Protein Binding Ligase Transferase	date	Nov 21, 2016
title	Structural Basis Of The Flanking Zinc-Finger Motifs Crucial Ligase Activity Of The Lnx1 Ring Domain
authors	D.Nayak, J.Sivaraman
compound		source
Molecule: Ubiquitin-Like 1 Chain: E, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: E3 Ubiquitin-Protein Ligase Lnx Chain: D, B Fragment: Unp Residues 11-138 Synonym: Ligand Of Numb-Protein X 1,Numb-Binding Protein 1, Domain-Containing Ring Finger Protein 2,Ring-Type E3 Ubiqui Transferase Lnx; Ec: 2.3.2.27 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lnx1, Lnx, Pdzrn2, Unq574pro1136 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ubiquitin-Conjugating Enzyme E2 N Chain: A, C Synonym: Bendless-Like Ubiquitin-Conjugating Enzyme,E2 Ubiq Conjugating Enzyme N,Ubc13,Ubch13,Ubiquitin Carrier Protein Ubiquitin-Protein Ligase N; Ec: 2.3.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2n, Blu Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31 2 1	R_factor 0.241 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 122.372 122.372 135.199 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.49 Å
ligand	ZN	enzyme	Transferase E.C.2.3.2.27 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structure of LNX1:Ubc13~Ubiquitin complex reveals the role of additional motifs for the E3 ligase activity of LNX1., Nayak D, Sivaraman J, J Mol Biol. 2018 Feb 26. pii: S0022-2836(18)30089-5. doi:, 10.1016/j.jmb.2018.02.016. PMID:29496391

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk] Biological Unit Coordinates (5h7s.pdb1.gz) 234 Kb LPC: Ligand-Protein Contacts for 5H7S CSU: Contacts of Structural Units for 5H7S Structure Factors (413 Kb) Retrieve 5H7S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5H7S from S2C, [Save to disk]

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Visual 3D analysis of 5H7S

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5h7s_E] [5h7s_D] [5h7s_B] [5h7s_A] [5h7s_F] [5h7s_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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