5H9M	Ligase	date	Dec 28, 2015
title	Crystal Structure Of Siah2 Sbd Domain
authors	A.Dong, Q.Zhang, J.R.Walker, C.Bountra, C.H.Arrowsmith, A.M.Edwar Y.Tong, Structural Genomics Consortium (Sgc)
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Siah2 Chain: A, B Synonym: Seven In Absentia Homolog 2,Hsiah2 Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Siah2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-Codonplus-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mkh8sumo
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.624 68.753 102.884 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.76 Å
ligand	1PE, CL, UNX, ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (5h9m.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 5H9M CSU: Contacts of Structural Units for 5H9M Structure Factors (2207 Kb) Retrieve 5H9M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5H9M from S2C, [Save to disk] Re-refined 5h9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5H9M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5H9M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5h9m] [5h9m_A] [5h9m_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5H9M at PDBWiki (http://pdbwiki.org)

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