5HA9 Transferase Transferase Inhibitor date Dec 30, 2015
title Crystal Structure-Based Design And Disovery Of A Novel Parp1 Antiagonist (Bl-Pa10) That Induces Apoptosis And Inhibits M In Triple Negative Breast Cancer
authors L.Fu, H.Peng, L.Zhang, L.Ouyang
compound source
Molecule: Poly [Adp-Ribose] Polymerase 1
Chain: A, B
Fragment: Unp Residues 662-1011
Synonym: Parp-1,Adp-Ribosyltransferase Diphtheria Toxin-Lik Nad(+) Adp-Ribosyltransferase 1,Adprt 1,Poly[Adp-Ribose] Sy
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp1
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12
symmetry Space Group: P 21 21 21
R_factor 0.242 R_Free 0.358
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.000 92.431 162.932 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.01 Å
ligand GOL, SO4, TP0 enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure-based discovery of a novel synthesized PARP1 inhibitor (OL-1) with apoptosis-inducing mechanisms in triple-negative breast cancer., Fu L, Wang S, Wang X, Wang P, Zheng Y, Yao D, Guo M, Zhang L, Ouyang L, Sci Rep. 2016 Dec 5;6(1):3. doi: 10.1038/s41598-016-0007-2. PMID:28442756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (5ha9.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 5HA9
  • CSU: Contacts of Structural Units for 5HA9
  • Structure Factors (175 Kb)
  • Retrieve 5HA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HA9 from S2C, [Save to disk]
  • Re-refined 5ha9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HA9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ha9] [5ha9_A] [5ha9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HA9
  • Community annotation for 5HA9 at PDBWiki (http://pdbwiki.org)

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