5HAM Hydrolase date Dec 30, 2015
title Structure Of Rickettsia Bellii Effector Protein Rickce
authors J.N.Pruneda, D.Komander
compound source
Molecule: Rickce
Chain: A, B
Fragment: Unp Residues 420-691
Engineered: Yes
 Organism_scientific: Rickettsia Bellii
Organism_taxid: 33990
Gene: Rbe_0198
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.164 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.496 173.496 55.516 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
Gene RBE
Primary referenceThe Molecular Basis for Ubiquitin and Ubiquitin-like Specificities in Bacterial Effector Proteases., Pruneda JN, Durkin CH, Geurink PP, Ovaa H, Santhanam B, Holden DW, Komander D, Mol Cell. 2016 Jul 21;63(2):261-76. doi: 10.1016/j.molcel.2016.06.015. Epub 2016 , Jul 14. PMID:27425412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (5ham.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (5ham.pdb2.gz) 87 Kb
  • CSU: Contacts of Structural Units for 5HAM
  • Structure Factors (1630 Kb)
  • Retrieve 5HAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HAM from S2C, [Save to disk]
  • Re-refined 5ham structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HAM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ham] [5ham_B] [5ham_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HAM
  • Community annotation for 5HAM at PDBWiki (http://pdbwiki.org)

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