5HB2 Transport Protein date Dec 31, 2015
title Crystal Structure Of Chaetomium Thermophilum Nic96 Sol
authors D.H.Lin, T.Stuwe, S.Schilbach, A.Hoelz
compound source
Molecule: Nucleoporin Nic96
Chain: C
Synonym: Nuclear Pore Protein Nic96
Engineered: Yes
 Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719);
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Nic96, Ctht_0008480
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.231 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.229 73.007 122.802 90.00 93.60 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand MSE enzyme
Gene CTHT
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceArchitecture of the symmetric core of the nuclear pore., Lin DH, Stuwe T, Schilbach S, Rundlet EJ, Perriches T, Mobbs G, Fan Y, Thierbach K, Huber FM, Collins LN, Davenport AM, Jeon YE, Hoelz A, Science. 2016 Apr 15;352(6283):aaf1015. doi: 10.1126/science.aaf1015. Epub 2016, Apr 14. PMID:27081075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (5hb2.pdb1.gz) 224 Kb
  • LPC: Ligand-Protein Contacts for 5HB2
  • CSU: Contacts of Structural Units for 5HB2
  • Structure Factors (220 Kb)
  • Retrieve 5HB2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HB2 from S2C, [Save to disk]
  • Re-refined 5hb2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HB2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HB2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k5hb2, region B:1-125,B:275-300 [Jmol] [rasmolscript] [script source]
        - Domain d1m5hb2, region B:1146-1297 [Jmol] [rasmolscript] [script source]
        - Domain d1s5hb2, region B:119-219 [Jmol] [rasmolscript] [script source]
        - Domain d1g5hb2, region B:40-332 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hb2_C] [5hb2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HB2
  • Community annotation for 5HB2 at PDBWiki (http://pdbwiki.org)

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