5HB6 Transport Protein date Dec 31, 2015
title Crystal Structure Of Chaetomium Thermophilum Nup145n Apd T99 Fused To Nup145c N
authors D.H.Lin, T.Stuwe, A.Hoelz
compound source
Molecule: Nucleoporin Nup145
Chain: A, B
Synonym: Nuclear Pore Protein Nup145
Ec: 3.4.21.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719);
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Nup145, Ctht_0042590
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.151 R_Free 0.174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.018 44.120 45.336 99.76 110.98 105.91
method X-Ray Diffractionresolution 1.30 Å
ligand SO4 enzyme Hydrolase E.C.3.4.21 BRENDA
Gene CTHT
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceArchitecture of the symmetric core of the nuclear pore., Lin DH, Stuwe T, Schilbach S, Rundlet EJ, Perriches T, Mobbs G, Fan Y, Thierbach K, Huber FM, Collins LN, Davenport AM, Jeon YE, Hoelz A, Science. 2016 Apr 15;352(6283):aaf1015. doi: 10.1126/science.aaf1015. Epub 2016, Apr 14. PMID:27081075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5hb6.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (5hb6.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (5hb6.pdb3.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 5HB6
  • CSU: Contacts of Structural Units for 5HB6
  • Structure Factors (614 Kb)
  • Retrieve 5HB6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HB6 from S2C, [Save to disk]
  • Re-refined 5hb6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HB6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HB6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hb6] [5hb6_B] [5hb6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HB6
  • Community annotation for 5HB6 at PDBWiki (http://pdbwiki.org)

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