5HCC	Immune System	date	Jan 04, 2016
title	Ternary Complex Of Human Complement C5 With Ornithodoros Mou And Dermacentor Andersoni Raci3.
authors	M.M.Jore, S.Johnson, S.M.Lea
compound		source
Molecule: Complement C5 Chain: B Fragment: Unp Residues 19-674 Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 4; Other_details: Chains A And B Are The Product Of A Single G Is Processed Into Two Chains That Remain Covalently Linked Disulphide.;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Complement C5 Chain: A Fragment: Unp Residues 679-1676 Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 4; Other_details: Chains A And B Are The Product Of A Single G Is Processed Into Two Chains That Remain Covalently Linked Disulphide.;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Complement Inhibitor Chain: C Engineered: Yes Mutation: Yes Other_details: N-Terminal Residues Correspond To Histidine- The Vector.;		Organism_scientific: Ornithodoros Moubata Organism_common: Soft Tick Organism_taxid: 6938 Gene: Ci Expression_system: Kluyveromyces Lactis Expression_system_taxid: 28985
Molecule: Dermacentor Andersoni Raci3 Chain: D Engineered: Yes Other_details: First 3 Residues Are Remnants Of Tag From Ve Mature Raci3 Sequence Begins Sges.		Organism_scientific: Dermacentor Andersoni Organism_taxid: 34620 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333 Expression_system_variant: Shuffle T7 Expression_system_vector_type: Plasmid Expression_system_plasmid: Petm14
symmetry	Space Group: P 21 21 21	R_factor 0.231 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.867 140.284 211.293 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.59 Å
ligand	CYS, DIO, EDO, NAG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis for therapeutic inhibition of complement C5., Jore MM, Johnson S, Sheppard D, Barber NM, Li YI, Nunn MA, Elmlund H, Lea SM, Nat Struct Mol Biol. 2016 May;23(5):378-86. doi: 10.1038/nsmb.3196. Epub 2016 Mar, 28. PMID:27018802

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (612 Kb) [Save to disk] Biological Unit Coordinates (5hcc.pdb1.gz) 604 Kb LPC: Ligand-Protein Contacts for 5HCC CSU: Contacts of Structural Units for 5HCC Structure Factors (6304 Kb) Retrieve 5HCC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HCC from S2C, [Save to disk] Re-refined 5hcc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HCC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HCC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hcc_D] [5hcc_C] [5hcc_A] [5hcc_B] [5hcc] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5HCC: [A2M] [A2M_N_2] [A2M_recep] [ANATO] [C345C ] by SMART

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