5HG1 Transferase Transferase Inhibitor date Jan 07, 2016
title Crystal Structure Of Human Hexokinase 2 With Cmpd 1, A C-2-S Glucosamine
authors N.Campobasso, B.Zhao, A.Smallwood
compound source
Molecule: Hexokinase-2
Chain: A
Synonym: Hexokinase Type II,Hk II,Muscle Form Hexokinase
Ec: 2.7.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.218 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.120 165.120 126.478 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.76 Å
ligand 62C, BG6, FLC enzyme Transferase E.C.2.7.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5hg1.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5HG1
  • CSU: Contacts of Structural Units for 5HG1
  • Structure Factors (1063 Kb)
  • Retrieve 5HG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HG1 from S2C, [Save to disk]
  • Re-refined 5hg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HG1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m5hg1, region G:6001-6145 [Jmol] [rasmolscript] [script source]
  • Fold representative 5hg1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hg1_A] [5hg1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HG1
  • Community annotation for 5HG1 at PDBWiki (http://pdbwiki.org)

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