5HOO Dna date Jan 19, 2016
title Crystal Structure Of The Mos1 Strand Transfer Complex
authors J.M.Richardson, E.R.Morris
compound source
Molecule: Mariner Mos1 Transposase
Chain: A, B
Fragment: Full-Length Mos1 Transposase
Synonym: Transposable Element Mos1 Transposase
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Drosophila Mauritiana
Organism_common: Fruit Fly
Organism_taxid: 7226
Gene: Mariner
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Mos1 Ir Dna Nts
Chain: C, E
Fragment: Mos1 Ir Dna Nts
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthetic Dna

Molecule: Mos1 Ir Ts Joined To Target Dna,Mos1 Ir Ts Joined Dna;
Chain: D, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct, Drosophila Maurit
Organism_common: Fruit Fly
Organism_taxid: 32630, 7226
Other_details: Synthetic Dna

Molecule: Target Dna
Chain: G, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
256.340 58.830 110.140 90.00 94.91 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand MG enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (362 Kb) [Save to disk]
  • Biological Unit Coordinates (5hoo.pdb1.gz) 355 Kb
  • LPC: Ligand-Protein Contacts for 5HOO
  • CSU: Contacts of Structural Units for 5HOO
  • Structure Factors (537 Kb)
  • Retrieve 5HOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HOO from S2C, [Save to disk]
  • Re-refined 5hoo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HOO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hoo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hoo_C] [5hoo_E] [5hoo_D] [5hoo_A] [5hoo_B] [5hoo_F] [5hoo_G] [5hoo] [5hoo_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HOO
  • Community annotation for 5HOO at PDBWiki (http://pdbwiki.org)

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