5HP1 Transferase Inhibitor Dna date Jan 19, 2016
title Structure Of Hiv-1 Reverse Transcriptase In Complex With A D And Foscarnet, A Pyrophosphate Analog
authors K.Das, E.Arnold
compound source
Molecule: Hiv-1 Reverse Transcriptase P66 Subunit
Chain: A, C
Synonym: Pr160gag-Pol
Ec: 2.7.7.49
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10);
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Isolate Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hiv-1 Reverse Transcriptase P51 Subunit
Chain: B, D
Synonym: Pr160gag-Pol
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10);
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Isolate Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (38-Mer)
Chain: F, E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.325 129.069 131.542 90.00 101.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand ATM, GOL, MG, OMC, PPF, SO4, SUC enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceConformational states of HIV-1 reverse transcriptase for nucleotide incorporation vs. pyrophosphorolysis - binding of foscarnet., Das K, Balzarini J, Miller MT, Maguire AR, DeStefano JJ, Arnold E, ACS Chem Biol. 2016 May 18. PMID:27192549
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (5hp1.pdb1.gz) 181 Kb
  • Biological Unit Coordinates (5hp1.pdb2.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 5HP1
  • CSU: Contacts of Structural Units for 5HP1
  • Structure Factors (1091 Kb)
  • Retrieve 5HP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HP1 from S2C, [Save to disk]
  • Re-refined 5hp1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HP1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hp1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hp1_A] [5hp1_E] [5hp1] [5hp1_B] [5hp1_F] [5hp1_D] [5hp1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HP1
  • Community annotation for 5HP1 at PDBWiki (http://pdbwiki.org)

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