5HPT Ligase Transferase date Jan 20, 2016
title System-Wide Modulation Of Hect E3 Ligases With Selective Ubi Variant Probes: Wwp1, Ubv P2.3 And Ubch7
authors K.P.Wu, B.A.Schulman
compound source
Molecule: Nedd4-Like E3 Ubiquitin-Protein Ligase Wwp1
Chain: A, D, G
Fragment: Hect Domain (Unp Residues 537-917)
Synonym: Atrophin-1-Interacting Protein 5,Aip5,Tgif-Interac Ubiquitin Ligase 1,Tiul1,Ww Domain-Containing Protein 1;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wwp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex

Molecule: Ubiquitin Variant P2.3
Chain: B, E, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex

Molecule: Ubiquitin-Conjugating Enzyme E2 L3
Chain: C, F
Synonym: E2 Ubiquitin-Conjugating Enzyme L3,L-Ubc,Ubch7,Ubi Carrier Protein L3,Ubiquitin-Conjugating Enzyme E2-F1,Ubiqu Protein Ligase L3;
Ec: 2.3.2.23
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2l3, Ubce7, Ubch7
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.005 118.897 158.663 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.84 Å
ligand MSE enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, G


F, C
  • transcription coactivator ac...


  • Primary referenceSystem-Wide Modulation of HECT E3 Ligases with Selective Ubiquitin Variant Probes., Zhang W, Wu KP, Sartori MA, Kamadurai HB, Ordureau A, Jiang C, Mercredi PY, Murchie R, Hu J, Persaud A, Mukherjee M, Li N, Doye A, Walker JR, Sheng Y, Hao Z, Li Y, Brown KR, Lemichez E, Chen J, Tong Y, Harper JW, Moffat J, Rotin D, Schulman BA, Sidhu SS, Mol Cell. 2016 Apr 7;62(1):121-36. doi: 10.1016/j.molcel.2016.02.005. Epub 2016, Mar 3. PMID:26949039
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (5hpt.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (5hpt.pdb2.gz) 101 Kb
  • Biological Unit Coordinates (5hpt.pdb3.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 5HPT
  • CSU: Contacts of Structural Units for 5HPT
  • Structure Factors (1331 Kb)
  • Retrieve 5HPT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HPT from S2C, [Save to disk]
  • Re-refined 5hpt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HPT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HPT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hpt_A] [5hpt_D] [5hpt_C] [5hpt_E] [5hpt_H] [5hpt_B] [5hpt] [5hpt_F] [5hpt_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5HPT: [HECTc] [UBCc] [UBQ ] by SMART
  • Other resources with information on 5HPT
  • Community annotation for 5HPT at PDBWiki (http://pdbwiki.org)

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