5HQ8	Transferase	date	Jan 21, 2016
title	Co-Crystal Structure Of Human Smyd3 With A Mekk2 Peptide At
authors	P.A.Elkins, W.G.Bonnette
compound		source
Molecule: Histone-Lysine N-Methyltransferase Smyd3 Chain: A, B Synonym: Set And Mynd Domain-Containing Protein 3,Zinc Fing Domain-Containing Protein 1; Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smyd3, Zmynd1, Znfn3a1 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_strain: Sf9
Molecule: Mekk2 Peptide Chain: I, J Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.174 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.109 118.155 84.782 90.00 90.61 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	EDO, GOL, MG, SAH, ZN	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk] Biological Unit Coordinates (5hq8.pdb1.gz) 149 Kb Biological Unit Coordinates (5hq8.pdb2.gz) 77 Kb LPC: Ligand-Protein Contacts for 5HQ8 CSU: Contacts of Structural Units for 5HQ8 Structure Factors (2981 Kb) Retrieve 5HQ8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HQ8 from S2C, [Save to disk] Re-refined 5hq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HQ8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HQ8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hq8_J] [5hq8] [5hq8_A] [5hq8_B] [5hq8_I] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5HQ8: [SET ] by SMART

Other resources with information on 5HQ8

Community annotation for 5HQ8 at PDBWiki (http://pdbwiki.org)

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