5HUP Transferase date Jan 27, 2016
title Crystal Structure Of Nadc From Streptococcus Pyogenes
authors W.T.Booth, M.Chruszcz
compound source
Molecule: Nicotinate-Nucleotide Pyrophosphorylase (Carboxyl
Chain: A, B, C, E, F, H
Fragment: Unp Residues 10-299
Ec: 2.4.2.19
Engineered: Yes
Organism_scientific: Streptococcus Pyogenes Serotype M4 (St Mgas10750);
Organism_taxid: 370554
Strain: Mgas10750
Gene: Nadc, Mgas10750_spy1186
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pjexpress411
symmetry Space Group: C 2 2 21
R_factor 0.233 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.149 188.816 222.181 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.42 Å
ligand SO4 enzyme Transferase E.C.2.4.2.19 BRENDA
Gene MGAS10750
Gene
Ontology
ChainFunctionProcessComponent
H, F, A, C, E, B


Primary referenceStreptococcus pyogenes quinolinate-salvage pathway-structural and functional studies of quinolinate phosphoribosyl transferase and NH3 -dependent NAD+ synthetase., Booth WT, Morris TL, Mysona DP, Shah MJ, Taylor LK, Karlin TW, Clary K, Majorek KA, Offermann LR, Chruszcz M, FEBS J. 2017 Aug;284(15):2425-2441. doi: 10.1111/febs.14136. Epub 2017 Jul 7. PMID:28618168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk]
  • Biological Unit Coordinates (5hup.pdb1.gz) 521 Kb
  • Biological Unit Coordinates (5hup.pdb2.gz) 528 Kb
  • LPC: Ligand-Protein Contacts for 5HUP
  • CSU: Contacts of Structural Units for 5HUP
  • Structure Factors (874 Kb)
  • Retrieve 5HUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HUP from S2C, [Save to disk]
  • Re-refined 5hup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HUP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hup_E] [5hup_F] [5hup_H] [5hup_C] [5hup] [5hup_A] [5hup_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HUP
  • Community annotation for 5HUP at PDBWiki (http://pdbwiki.org)

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