5HVK Transferase date Jan 28, 2016
title Crystal Structure Of Limk1 Mutant D460n In Complex With Full Cofilin-1
authors S.Hamill, T.J.Boggon
compound source
Molecule: Lim Domain Kinase 1
Chain: A, C
Fragment: Unp Residues 329-638
Synonym: Limk-1
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Limk1, Limk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Pfastbac Htb

Molecule: Cofilin-1
Chain: B
Synonym: 18 Kda Phosphoprotein,P18,Cofilin,Non-Muscle Isofo
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cfl1, Cfl
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-28a

Molecule: Cofilin-1
Chain: D
Synonym: 18 Kda Phosphoprotein,P18,Cofilin,Non-Muscle Isofo
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cfl1, Cfl
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 21 21 21
R_factor 0.273 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.116 102.283 141.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand ANP, MG, SEP, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural Basis for Noncanonical Substrate Recognition of Cofilin/ADF Proteins by LIM Kinases., Hamill S, Lou HJ, Turk BE, Boggon TJ, Mol Cell. 2016 May 5;62(3):397-408. doi: 10.1016/j.molcel.2016.04.001. PMID:27153537
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (5hvk.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (5hvk.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 5HVK
  • CSU: Contacts of Structural Units for 5HVK
  • Structure Factors (242 Kb)
  • Retrieve 5HVK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HVK from S2C, [Save to disk]
  • Re-refined 5hvk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HVK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HVK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hvk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hvk_A] [5hvk_C] [5hvk] [5hvk_D] [5hvk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5HVK: [ADF] [STYKc ] by SMART
  • Other resources with information on 5HVK
  • Community annotation for 5HVK at PDBWiki (http://pdbwiki.org)

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