5HX5 Hydrolase date Jan 29, 2016
title Apobec3f Catalytic Domain Crystal Structure
authors N.M.Shaban, K.Shi, H.Aihara, R.S.Harris
compound source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3f
Chain: A, B
Fragment: Unp Residues 185-373
Synonym: Apolipoprotein B Mrna-Editing Enzyme Catalytic Pol Like 3f,A3f;
Ec: 3.5.4.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apobec3f
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.940 50.900 100.860 90.00 90.75 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand ZN enzyme Hydrolase E.C.3.5.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (5hx5.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (5hx5.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5HX5
  • CSU: Contacts of Structural Units for 5HX5
  • Structure Factors (974 Kb)
  • Retrieve 5HX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HX5 from S2C, [Save to disk]
  • Re-refined 5hx5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HX5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hx5] [5hx5_B] [5hx5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HX5
  • Community annotation for 5HX5 at PDBWiki (http://pdbwiki.org)

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