5I95 Oxidoreductase date Feb 19, 2016
title Crystal Structure Of Human Mitochondrial Isocitrate Dehydrog R140q Mutant Homodimer Bound To Nadph And Alpha-Ketoglutari
authors B.Zhang, L.Jin, W.Wu, F.Jiang, B.Delabarre, J.A.Travins, A.K.Padya
compound source
Molecule: Isocitrate Dehydrogenase [Nadp], Mitochondrial
Chain: A
Fragment: Unp Residues 40-452
Synonym: Idh,Icd-M,Idp,Nadp(+)-Specific Icdh,Oxalosuccinate Decarboxylase;
Ec: 1.1.1.42
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Idh2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-41a(+)
symmetry Space Group: C 2 2 21
R_factor 0.142 R_Free 0.174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.178 154.875 93.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand ACT, AKG, CA, GOL, NDP enzyme Oxidoreductase E.C.1.1.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTargeted Inhibition of Mutant IDH2 in Leukemia Cells Induces Cellular Differentiation., Wang F, Travins J, Delabarre B, Penard-Lacronique V, Schalm S, Hansen E, Straley K, Kernytsky A, Liu W, Gliser C, Yang H, Gross S, Artin E, Saada V, Mylonas E, Quivoron C, Popovici-Muller J, Saunders JO, Salituro FG, Yan S, Murray S, Wei W, Gao Y, Dang L, Dorsch M, Agresta S, Schenkein DP, Biller SA, Su SM, de Botton S, Yen KE, Science. 2013 Apr 4. PMID:23558173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (5i95.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 5I95
  • CSU: Contacts of Structural Units for 5I95
  • Structure Factors (1522 Kb)
  • Retrieve 5I95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I95 from S2C, [Save to disk]
  • Re-refined 5i95 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I95 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I95
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i95] [5i95_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I95
  • Community annotation for 5I95 at PDBWiki (http://pdbwiki.org)

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