5IF4 Apoptosis Apoptosis Inhibitor date Feb 25, 2016
title Discovery Of Potent Myeloid Cell Leukemia-1 (Mcl-1) Inhibito Structure-Based Design
authors B.Zhao
compound source
Molecule: Induced Myeloid Leukemia Cell Differentiation Pro 1;
Chain: A, B
Fragment: Unp Residues 172-327
Synonym: Bcl-2-Like Protein 3,Bcl2-L-3,Bcl-2-Related Protei Eatmcl1,Mcl1eat;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcl1, Bcl2l3
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.748 87.842 54.072 90.00 99.68 90.00
method X-Ray Diffractionresolution 2.39 Å
ligand 6AK enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery and biological characterization of potent myeloid cell leukemia-1 inhibitors., Lee T, Bian Z, Zhao B, Hogdal LJ, Sensintaffar JL, Goodwin CM, Belmar J, Shaw S, Tarr JC, Veerasamy N, Matulis SM, Koss B, Fischer MA, Arnold AL, Camper DV, Browning CF, Rossanese OW, Budhraja A, Opferman J, Boise LH, Savona MR, Letai A, Olejniczak ET, Fesik SW, FEBS Lett. 2017 Jan;591(1):240-251. doi: 10.1002/1873-3468.12497. Epub 2016 Dec, 19. PMID:27878989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (5if4.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (5if4.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 5IF4
  • CSU: Contacts of Structural Units for 5IF4
  • Structure Factors (220 Kb)
  • Retrieve 5IF4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IF4 from S2C, [Save to disk]
  • Re-refined 5if4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5IF4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5IF4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5if4_A] [5if4_B] [5if4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5IF4
  • Community annotation for 5IF4 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science