OCA Atlas for 5IFU

5IFU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, EDO, FMT, GBM

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A

Primary reference

Biochemical and Structural Characterization of Selective Allosteric Inhibitors of the Plasmodium falciparum Drug Target, Prolyl-tRNA-synthetase., Nakazawa Hewitt S, Dranow DM, Horst BG, Abendroth JA, Forte B, Hallyburton I, Jansen C, Baragana B, Choi R, Rivas KL, Hulverson MA, Dumais M, Edwards TE, Lorimer DD, Fairlamb AH, Gray DW, Read KD, Lehane AM, Kirk K, Myler PJ, Wernimont A, Walpole CS, Stacy R, Barrett LK, Gilbert IH, Van Voorhis WC, ACS Infect Dis. 2016 Oct 31. PMID:27798837

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]

Biological Unit Coordinates (5ifu.pdb1.gz) 151 Kb

Biological Unit Coordinates (5ifu.pdb2.gz) 149 Kb

Biological Unit Coordinates (5ifu.pdb3.gz) 588 Kb

LPC: Ligand-Protein Contacts for 5IFU

CSU: Contacts of Structural Units for 5IFU

Structure Factors (964 Kb)

Retrieve 5IFU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5IFU from S2C, [Save to disk]

Re-refined 5ifu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IFU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ifu] [5ifu_A] [5ifu_B]

SWISS-PROT database:

Domain found in 5IFU: [ProRS-C_1 ] by SMART

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