5IJ0 Structural Protein date Mar 01, 2016
title Cryo Em Density Of Microtubule Assembled From Human Tubb3
authors S.C.Ti, M.C.Pamula, S.C.Howes, C.Duellberg, C.I.Nicholas, R.E.Kl S.Forth, T.Surrey, E.Nogales, T.M.Kapoor
compound source
Molecule: Tubulin Alpha-1b Chain
Chain: A
Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tuba1b
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Tubulin Beta-3 Chain
Chain: B
Synonym: Tubulin Beta-4 Chain,Tubulin Beta-III
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tubb3, Tubb4
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand GDP, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • netrin receptor binding


  • Primary referenceMutations in Human Tubulin Proximal to the Kinesin-Binding Site Alter Dynamic Instability at Microtubule Plus- and Minus-Ends., Ti SC, Pamula MC, Howes SC, Duellberg C, Cade NI, Kleiner RE, Forth S, Surrey T, Nogales E, Kapoor TM, Dev Cell. 2016 Apr 4;37(1):72-84. doi: 10.1016/j.devcel.2016.03.003. PMID:27046833
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (5ij0.pdb1.gz) 261 Kb
  • LPC: Ligand-Protein Contacts for 5IJ0
  • CSU: Contacts of Structural Units for 5IJ0
  • Retrieve 5IJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJ0 from S2C, [Save to disk]
  • View 5IJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 5IJ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ij0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ij0_A] [5ij0] [5ij0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5IJ0: [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 5IJ0
  • Community annotation for 5IJ0 at PDBWiki (http://pdbwiki.org)

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