5IXK	Immune System	date	Mar 23, 2016
title	Rorgamma In Complex With Inverse Agonist Bio399.
authors	D.J.Marcotte
compound		source
Molecule: Nuclear Receptor Ror-Gamma Chain: A, B Fragment: Ligand Binding Domain Unp Residue 268-487 Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rorc, Nr1f3, Rorg, Rzrg Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: C 1 2 1	R_factor 0.211 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.939 56.167 78.752 90.00 124.77 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	6EW	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural determinant for inducing RORgamma specific inverse agonism triggered by a synthetic benzoxazinone ligand., Marcotte DJ, Liu Y, Little K, Jones JH, Powell NA, Wildes CP, Silvian LF, Chodaparambil JV, BMC Struct Biol. 2016 Jun 1;16(1):7. doi: 10.1186/s12900-016-0059-3. PMID:27246200

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (5ixk.pdb1.gz) 72 Kb Biological Unit Coordinates (5ixk.pdb2.gz) 71 Kb LPC: Ligand-Protein Contacts for 5IXK CSU: Contacts of Structural Units for 5IXK Structure Factors (417 Kb) Retrieve 5IXK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IXK from S2C, [Save to disk] Re-refined 5ixk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IXK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IXK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ixk_B] [5ixk] [5ixk_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5IXK: [HOLI ] by SMART

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