5J2P HIV-1 reverse transcriptase in complex with DNA that has incorporated EFdA-MP at the P-(post-translocation) site and a second EFdA-MP at the N-(pre-translocation) site date
authors Salie, Z.L., Kirby, K.A., Sarafianos, S.G.
compound source
R_Free 0.2462
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.53
ligand 6FM, MG, MRG enzyme


Primary referenceStructural basis of HIV inhibition by translocation-defective RT inhibitor 4'-ethynyl-2-fluoro-2'-deoxyadenosine (EFdA)., Salie ZL, Kirby KA, Michailidis E, Marchand B, Singh K, Rohan LC, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG, Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9274-9. doi:, 10.1073/pnas.1605223113. Epub 2016 Aug 3. PMID:27489345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (389 Kb) [Save to disk]
  • Biological Unit Coordinates (5j2p.pdb1.gz) 382 Kb
  • LPC: Ligand-Protein Contacts for 5J2P
  • CSU: Contacts of Structural Units for 5J2P
  • Structure Factors (3008 Kb)
  • Retrieve 5J2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J2P from S2C, [Save to disk]
  • Re-refined 5j2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J2P in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J2P
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5j2p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j2p] [5j2p_T] [5j2p_P] [5j2p_B] [5j2p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J2P
  • Community annotation for 5J2P at PDBWiki (http://pdbwiki.org)

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