OCA Atlas for 5J9Q

5J9Q

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ALY

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, G, N
F, B, J	histone acetyltransferase ac...		NuA3 histone acetyltransfera...
I, E, A

Primary reference

The NuA4 Core Complex Acetylates Nucleosomal Histone H4 through a Double Recognition Mechanism., Xu P, Li C, Chen Z, Jiang S, Fan S, Wang J, Dai J, Zhu P, Chen Z, Mol Cell. 2016 Sep 15;63(6):965-75. doi: 10.1016/j.molcel.2016.07.024. Epub 2016 , Sep 1. PMID:27594449

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (807 Kb) [Save to disk]

Biological Unit Coordinates (5j9q.pdb1.gz) 268 Kb

Biological Unit Coordinates (5j9q.pdb2.gz) 267 Kb

Biological Unit Coordinates (5j9q.pdb3.gz) 263 Kb

LPC: Ligand-Protein Contacts for 5J9Q

CSU: Contacts of Structural Units for 5J9Q

Structure Factors (1352 Kb)

Retrieve 5J9Q in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5J9Q from S2C, [Save to disk]

Re-refined 5j9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5J9Q in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j9q_A] [5j9q_B] [5j9q_C] [5j9q_D] [5j9q_E] [5j9q_F] [5j9q_I] [5j9q] [5j9q_G] [5j9q_H] [5j9q_J] [5j9q_K] [5j9q_L] [5j9q_M] [5j9q_N] [5j9q_O]

SWISS-PROT database:

Domain found in 5J9Q: [ING ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]