5JBG	Immune System	date	Apr 13, 2016
title	Crystal Structure Of Chicken Lgp2 With 5'Ppp 26-Mer Hairpin 3' Gg Overhang And Adp-Alf4-Mg2+ At 2.0 A Resolution.
authors	S.Cusack, E.Uchikawa
compound		source
Molecule: Lgp2 Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta 2 Expression_system_vector_type: Plasmid Expression_system_vector: Petm11sumo
Molecule: Rna (5'- R(Gpppgpapgpcpgpupgpcpcpgpgpgpcpapcpgpcp Pg)-3'); Chain: X Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.860 97.430 122.580 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ADP, ALF, GTP, MG, SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5., Uchikawa E, Lethier M, Malet H, Brunel J, Gerlier D, Cusack S, Mol Cell. 2016 May 19;62(4):586-602. doi: 10.1016/j.molcel.2016.04.021. PMID:27203181

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk] Biological Unit Coordinates (5jbg.pdb1.gz) 123 Kb LPC: Ligand-Protein Contacts for 5JBG CSU: Contacts of Structural Units for 5JBG Structure Factors (1145 Kb) Retrieve 5JBG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JBG from S2C, [Save to disk] Re-refined 5jbg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JBG in 3D

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Visual 3D analysis of 5JBG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jbg_A] [5jbg_X] [5jbg] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5JBG: [DEXDc] [HELICc ] by SMART

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