5JCH	Immune System	date	Apr 15, 2016
title	Crystal Structure Of Chicken Mda5 With 5'P 10-Mer Dsrna And At 2.95 A Resolution (Untwinned).
authors	S.Cusack, E.Uchikawa
compound		source
Molecule: Melanoma Differentiation Associated Protein-5 Chain: A, B Engineered: Yes Mutation: Yes Other_details: Chicken Mda5 Helicase And Ctd Domains		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Gene: Mda5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta 2 Expression_system_vector_type: Petm11
Molecule: Rna (5'-R(Pgpgpupapcpgpupapcpc)-3') Chain: X, Y, U, V Engineered: Yes Other_details: Synthetic Dsrna Obtained By In Vitro T7 Tran		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.256 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.080 139.730 103.190 90.00 110.14 90.00
method	X-Ray Diffraction	resolution	2.95 Å
ligand	ADP, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5., Uchikawa E, Lethier M, Malet H, Brunel J, Gerlier D, Cusack S, Mol Cell. 2016 May 19;62(4):586-602. doi: 10.1016/j.molcel.2016.04.021. PMID:27203181

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk] Biological Unit Coordinates (5jch.pdb1.gz) 117 Kb Biological Unit Coordinates (5jch.pdb2.gz) 117 Kb LPC: Ligand-Protein Contacts for 5JCH CSU: Contacts of Structural Units for 5JCH Structure Factors (821 Kb) Retrieve 5JCH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JCH from S2C, [Save to disk] Re-refined 5jch structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JCH in 3D

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Visual 3D analysis of 5JCH

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jch_B] [5jch] [5jch_V] [5jch_U] [5jch_A] [5jch_X] [5jch_Y] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5JCH: [DEXDc] [HELICc ] by SMART

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