5JDO		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	HEM, OXY	enzyme
Gene	TCIL3000
Gene Ontology	Chain Function Process Component C, E peroxidase activity F, D peroxidase activity
Primary reference	Evolutionary diversification of the trypanosome haptoglobin-haemoglobin receptor from an ancestral haemoglobin receptor., Lane-Serff H, MacGregor P, Peacock L, Macleod OJ, Kay C, Gibson W, Higgins MK, Carrington M, Elife. 2016 Apr 15;5. pii: e13044. doi: 10.7554/eLife.13044. PMID:27083048

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk] Biological Unit Coordinates (5jdo.pdb1.gz) 338 Kb LPC: Ligand-Protein Contacts for 5JDO CSU: Contacts of Structural Units for 5JDO Structure Factors (720 Kb) Retrieve 5JDO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JDO from S2C, [Save to disk] Re-refined 5jdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JDO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jdo] [5jdo_A] [5jdo_B] [5jdo_C] [5jdo_D] [5jdo_E] [5jdo_F] SWISS-PROT database:

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