5JHE Chaperone date Apr 20, 2016
title The Crystal Structure Of The Saccharomyces Cerevisiae Co-Cha Cpr7
authors Q.Yu, L.Xu
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Cyp7
Chain: A
Synonym: Ppiase Cyp7,Rotamase Cyp7
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Yeast
Organism_taxid: 559292
Strain: S288c
Gene: Cpr7, Yjr032w, J1585
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 42
R_factor 0.185 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.332 75.332 100.794 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5jhe.pdb1.gz) 136 Kb
  • CSU: Contacts of Structural Units for 5JHE
  • Structure Factors (902 Kb)
  • Retrieve 5JHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JHE from S2C, [Save to disk]
  • Re-refined 5jhe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JHE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jhe] [5jhe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JHE
  • Community annotation for 5JHE at PDBWiki (http://pdbwiki.org)

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