5JHO Transport Protein date Apr 21, 2016
title Crystal Structure Of The Regulatory Domain Of The Sodium Dri Chloride Bicarbonate Exchanger.
authors C.Alvadia, T.Sommer, K.Bjerregaard-Andersen, J.P.Morth
compound source
Molecule: Electroneutral Sodium Bicarbonate Exchanger 1
Chain: A, B
Synonym: Electroneutral Na(+)-Driven Cl-Hco3 Exchanger,Solu Family 4 Member 8,K-Nbc3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc4a8, Kiaa0739, Nbc, Nbc3, Ndcbe1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Gold
Expression_system_vector_type: Plasmid
Expression_system_vector: Petm11
symmetry Space Group: P 43 2 2
R_factor 0.200 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.040 98.040 212.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of the regulatory domain of the human sodium-driven chloride/bicarbonate exchanger., Alvadia CM, Sommer T, Bjerregaard-Andersen K, Damkier HH, Montrasio M, Aalkjaer C, Morth JP, Sci Rep. 2017 Sep 21;7(1):12131. doi: 10.1038/s41598-017-12409-0. PMID:28935959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (5jho.pdb1.gz) 165 Kb
  • CSU: Contacts of Structural Units for 5JHO
  • Structure Factors (1775 Kb)
  • Retrieve 5JHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JHO from S2C, [Save to disk]
  • View 5JHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JHO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jho_A] [5jho_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JHO
  • Community annotation for 5JHO at PDBWiki (http://pdbwiki.org)

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