5JIL Viral Protein date Apr 22, 2016
title Crystal Structure Of Rat Coronavirus Strain New-Jersey Hemag Esterase In Complex With 4n-Acetyl Sialic Acid
authors M.J.G.Bakkers, L.J.Feitsma, R.J.De Groot, E.G.Huizinga
compound source
Molecule: Hemagglutinin-Esterase
Chain: A
Fragment: Unp Residues 22-400
Synonym: He Protein,E3 Glycoprotein
Ec: 3.1.1.53
Engineered: Yes
Mutation: Yes
Organism_scientific: Rat Coronavirus
Organism_taxid: 31632
Gene: He
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: C 2 2 21
R_factor 0.184 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.090 184.590 78.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand 6KL, NA, NAG, ZN enzyme Hydrolase E.C.3.1.1.53 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCoronavirus receptor switch explained from the stereochemistry of protein-carbohydrate interactions and a single mutation., Bakkers MJ, Zeng Q, Feitsma LJ, Hulswit RJ, Li Z, Westerbeke A, van Kuppeveld FJ, Boons GJ, Langereis MA, Huizinga EG, de Groot RJ, Proc Natl Acad Sci U S A. 2016 May 16. pii: 201519881. PMID:27185912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (5jil.pdb1.gz) 260 Kb
  • LPC: Ligand-Protein Contacts for 5JIL
  • CSU: Contacts of Structural Units for 5JIL
  • Structure Factors (734 Kb)
  • Retrieve 5JIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JIL from S2C, [Save to disk]
  • Re-refined 5jil structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JIL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jil] [5jil_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JIL
  • Community annotation for 5JIL at PDBWiki (http://pdbwiki.org)

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