5JLH Contractile Protein date Apr 27, 2016
title Cryo-Em Structure Of A Human Cytoplasmic Actomyosin Complex Atomic Resolution
authors J.Von Der Ecken, S.M.Heissler, S.Pathan-Chhatbar, D.J.Manstein,
compound source
Molecule: Actin, Cytoplasmic 2
Chain: A, B, C, D, E
Synonym: Gamma-Actin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actg1, Actg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Myosin-14,Alpha-Actinin A
Chain: F, G
Synonym: Myosin Heavy Chain 14,Myosin Heavy Chain,Non-Muscl Muscle Myosin Heavy Chain Iic,Nmhc II-C, Alpha-Actinin,Acti Protein A,F-Actin Cross-Linking Protein;
Engineered: Yes
Other_details: Non Muscle Myosin 2c Heavy Chain, Motor Doma Residues 1-799 Linked To Alpha-Actinin 3, Repeats 1 And 2 R
800-1039 Fragment: Unp Q7z406-1 Residues 1-799, Unp P05095 265-502;

Organism_scientific: Homo Sapiens, Dictyostelium Discoideum
Organism_common: Human, Slime Mold
Organism_taxid: 9606, 44689
Gene: Myh14, Kiaa2034, Fp17425, Abpa, Actna, Ddb_g0268632
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Tropomyosin Alpha-3 Chain
Chain: H, I, J, K
Engineered: Yes
Other_details: Human Tropomysin Was Used (Unp P06753-2,Tpm3 Residues 62-196). Due To The Limited Resolution Of The Cryo Density In The Region Of Tropomyosin, Tropomyosin Has Been Represented As Poly(Unk).

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ADP, MG enzyme
Gene DDB
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B
  • structural constituent of po...

  • cytoskeleton
  • F, G


    Primary referenceCryo-EM structure of a human cytoplasmic actomyosin complex at near-atomic resolution., von der Ecken J, Heissler SM, Pathan-Chhatbar S, Manstein DJ, Raunser S, Nature. 2016 Jun 30;534(7609):724-8. PMID:27324845
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (600 Kb) [Save to disk]
  • Biological Unit Coordinates (5jlh.pdb1.gz) 589 Kb
  • LPC: Ligand-Protein Contacts for 5JLH
  • CSU: Contacts of Structural Units for 5JLH
  • Retrieve 5JLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JLH from S2C, [Save to disk]
  • View 5JLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JLH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jlh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jlh_F] [5jlh_J] [5jlh_I] [5jlh] [5jlh_K] [5jlh_B] [5jlh_C] [5jlh_H] [5jlh_G] [5jlh_D] [5jlh_E] [5jlh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5JLH: [ACTIN] [MYSc] [SPEC ] by SMART
  • Other resources with information on 5JLH
  • Community annotation for 5JLH at PDBWiki (http://pdbwiki.org)

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