5JLV	Hydrolase	date	Apr 27, 2016
title	Receptor Binding Domain Of Botulinum Neurotoxin A In Complex Human Glycosylated Sv2c
authors	G.Yao, S.Zhang, S.Mahrhold, K.Lam, D.Stern, K.Bagramyan, K.Perry, M A.Rummel, M.Dong, R.Jin
compound		source
Molecule: Botulinum Neurotoxin Type A Chain: A, B Fragment: Unp Residues 872-1296 Synonym: Bonta,Bontoxilysin-A,Botox Ec: 3.4.24.69 Engineered: Yes Mutation: Yes		Organism_scientific: Clostridium Botulinum Organism_taxid: 1491 Gene: Bota, Atx, Bna Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Synaptic Vesicle Glycoprotein 2c Chain: C, D Fragment: Unp Residues 473-567 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sv2c, Kiaa1054 Expression_system: Mammalian Expression Vector Pcbio Expression_system_taxid: 386595
symmetry	Space Group: C 1 2 1	R_factor 0.176 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.002 111.853 126.253 90.00 101.29 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ACT, BMA, FUC, NAG, PO4	enzyme	Hydrolase E.C.3.4.24.69 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A., Yao G, Zhang S, Mahrhold S, Lam KH, Stern D, Bagramyan K, Perry K, Kalkum M, Rummel A, Dong M, Jin R, Nat Struct Mol Biol. 2016 Jul;23(7):656-62. doi: 10.1038/nsmb.3245. Epub 2016 Jun, 13. PMID:27294781

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (383 Kb) [Save to disk] Biological Unit Coordinates (5jlv.pdb1.gz) 190 Kb Biological Unit Coordinates (5jlv.pdb2.gz) 187 Kb LPC: Ligand-Protein Contacts for 5JLV CSU: Contacts of Structural Units for 5JLV Structure Factors (2096 Kb) Retrieve 5JLV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JLV from S2C, [Save to disk] Re-refined 5jlv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JLV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JLV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jlv] [5jlv_B] [5jlv_D] [5jlv_A] [5jlv_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5JLV

Community annotation for 5JLV at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---