5JMY Hydrolase date Apr 29, 2016
title Neprilysin Complexed With Lbq657
authors N.Schiering, C.Wiesmann
compound source
Molecule: Neprilysin
Chain: A, B
Fragment: Unp Residues 53-750
Synonym: Atriopeptidase,Common Acute Lymphocytic Leukemia A Calla,Enkephalinase,Neutral Endopeptidase 24.11,Neutral Endopeptidase,Skin Fibroblast Elastase,Sfe;
Ec: 3.4.24.11
Engineered: Yes
Other_details: Lbq657 - The Active Metabolite Of Sacubitril Contained In Entresto (Sacubitrilvalsartan)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mme, Epn
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.737 109.139 248.003 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 6LD, NAG, ZN enzyme Hydrolase E.C.3.4.24.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of neprilysin in complex with the active metabolite of sacubitril., Schiering N, D'Arcy A, Villard F, Ramage P, Logel C, Cumin F, Ksander GM, Wiesmann C, Karki RG, Mogi M, Sci Rep. 2016 Jun 15;6:27909. doi: 10.1038/srep27909. PMID:27302413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk]
  • Biological Unit Coordinates (5jmy.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (5jmy.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 5JMY
  • CSU: Contacts of Structural Units for 5JMY
  • Structure Factors (2959 Kb)
  • Retrieve 5JMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JMY from S2C, [Save to disk]
  • Re-refined 5jmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JMY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jmy_B] [5jmy] [5jmy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JMY
  • Community annotation for 5JMY at PDBWiki (http://pdbwiki.org)

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