5JPN Structure of human complement C4 rebuilt using iMDFF date
authors Croll, T.I., Andersen, G.R.
compound source
symmetry
R_factor
R_Free 0.2629
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
ligand A2G, BMA, MAN, NAG, PBM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceStructural basis for activation of the complement system by component C4 cleavage., Kidmose RT, Laursen NS, Dobo J, Kjaer TR, Sirotkina S, Yatime L, Sottrup-Jensen L, Thiel S, Gal P, Andersen GR, Proc Natl Acad Sci U S A. 2012 Sep 4. PMID:22949645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (557 Kb) [Save to disk]
  • Biological Unit Coordinates (5jpn.pdb1.gz) 547 Kb
  • LPC: Ligand-Protein Contacts for 5JPN
  • CSU: Contacts of Structural Units for 5JPN
  • Structure Factors (213 Kb)
  • Retrieve 5JPN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JPN from S2C, [Save to disk]
  • Re-refined 5jpn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JPN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JPN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jpn_B] [5jpn_C] [5jpn_A] [5jpn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5JPN: [A2M] [A2M_N_2] [A2M_recep] [ANATO] [C345C] [Thiol-ester_cl ] by SMART
    • Other resources with information on 5JPN
  • Community annotation for 5JPN at PDBWiki (http://pdbwiki.org)

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