5JQS Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin date
authors Rehman, S.A.Abdul., Kulathu, Y.
compound source
symmetry
R_factor
R_Free 0.2309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand AYE, CL, DIO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMINDY-1 Is a Member of an Evolutionarily Conserved and Structurally Distinct New Family of Deubiquitinating Enzymes., Abdul Rehman SA, Kristariyanto YA, Choi SY, Nkosi PJ, Weidlich S, Labib K, Hofmann K, Kulathu Y, Mol Cell. 2016 Jul 7;63(1):146-55. doi: 10.1016/j.molcel.2016.05.009. Epub 2016, Jun 9. PMID:27292798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5jqs.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5JQS
  • CSU: Contacts of Structural Units for 5JQS
  • Structure Factors (1255 Kb)
  • Retrieve 5JQS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JQS from S2C, [Save to disk]
  • Re-refined 5jqs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JQS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JQS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jqs_A] [5jqs] [5jqs_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JQS: [UBQ ] by SMART
  • Other resources with information on 5JQS
  • Community annotation for 5JQS at PDBWiki (http://pdbwiki.org)

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