5JSA date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


D


Primary referenceUncleaved prefusion-optimized gp140 trimers derived from analysis of HIV-1 envelope metastability., Kong L, He L, de Val N, Vora N, Morris CD, Azadnia P, Sok D, Zhou B, Burton DR, Ward AB, Wilson IA, Zhu J, Nat Commun. 2016 Jun 28;7:12040. doi: 10.1038/ncomms12040. PMID:27349805
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (5jsa.pdb1.gz) 642 Kb
  • LPC: Ligand-Protein Contacts for 5JSA
  • CSU: Contacts of Structural Units for 5JSA
  • Structure Factors (117 Kb)
  • Retrieve 5JSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JSA from S2C, [Save to disk]
  • Re-refined 5jsa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jsa_E] [5jsa_D] [5jsa_F] [5jsa] [5jsa_A] [5jsa_B] [5jsa_C]
  • SWISS-PROT database:
  • Domains found in 5JSA: [IG_like] [IGv ] by SMART

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