5JZC Dna Binding Protein date May 16, 2016
title Helical Filament
authors J.Short, Y.Liu
compound source
Molecule: Dna Repair Protein Rad51 Homolog 1
Chain: A, B, C, D, E, F, G
Synonym: Hrad51,Rad51 Homolog A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rad51, Rad51a, Reca
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Primary referenceHigh-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy., Short JM, Liu Y, Chen S, Soni N, Madhusudhan MS, Shivji MK, Venkitaraman AR, Nucleic Acids Res. 2016 Sep 5. pii: gkw783. PMID:27596592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (5jzc.pdb1.gz) 246 Kb
  • CSU: Contacts of Structural Units for 5JZC
  • Retrieve 5JZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JZC from S2C, [Save to disk]
    • View 5JZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JZC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jzc_E] [5jzc] [5jzc_B] [5jzc_F] [5jzc_A] [5jzc_D] [5jzc_G] [5jzc_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5JZC: [AAA] [HhH1 ] by SMART
    • Other resources with information on 5JZC
  • Community annotation for 5JZC at PDBWiki (http://pdbwiki.org)

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