5K5B date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, LBV, MPD enzyme
Gene DR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography., Edlund P, Takala H, Claesson E, Henry L, Dods R, Lehtivuori H, Panman M, Pande K, White T, Nakane T, Berntsson O, Gustavsson E, Bath P, Modi V, Roy-Chowdhury S, Zook J, Berntsen P, Pandey S, Poudyal I, Tenboer J, Kupitz C, Barty A, Fromme P, Koralek JD, Tanaka T, Spence J, Liang M, Hunter MS, Boutet S, Nango E, Moffat K, Groenhof G, Ihalainen J, Stojkovic EA, Schmidt M, Westenhoff S, Sci Rep. 2016 Oct 19;6:35279. doi: 10.1038/srep35279. PMID:27756898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (5k5b.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 5K5B
  • CSU: Contacts of Structural Units for 5K5B
  • Structure Factors (1628 Kb)
  • Retrieve 5K5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K5B from S2C, [Save to disk]
  • Re-refined 5k5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k5b] [5k5b_A]
  • SWISS-PROT database:
  • Domains found in 5K5B: [GAF] [PAS ] by SMART

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