OCA Atlas for 5KJ8

5KJ8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, G
B, H
D, I, J, C
F, E, K

Primary reference

Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex., Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Zhou Q, Zhao M, Brewster AS, Michels-Clark T, Holton JM, Sauter NK, Weis WI, Brunger AT, Elife. 2016 Oct 12;5. pii: e18740. doi: 10.7554/eLife.18740. PMID:27731796

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]

Biological Unit Coordinates (5kj8.pdb1.gz) 79 Kb

Biological Unit Coordinates (5kj8.pdb2.gz) 40 Kb

Biological Unit Coordinates (5kj8.pdb3.gz) 78 Kb

LPC: Ligand-Protein Contacts for 5KJ8

CSU: Contacts of Structural Units for 5KJ8

Structure Factors (244 Kb)

Retrieve 5KJ8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5KJ8 from S2C, [Save to disk]

Re-refined 5kj8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KJ8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kj8] [5kj8_A] [5kj8_B] [5kj8_C] [5kj8_D] [5kj8_E] [5kj8_F] [5kj8_G] [5kj8_H] [5kj8_I] [5kj8_J] [5kj8_K]

SWISS-PROT database:

Domains found in 5KJ8: [C2] [t_SNARE ] by SMART

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