5KPC Transferase date Jul 03, 2016
title Pavine N-Methyltransferase H206a Mutant In Complex With S- Adenosylmethionine Ph 6
authors M.A.Torres, E.Hoffarth, L.Eugenio, J.Savtchouk, X.Chen, J.Morris, P.J.Facchini, K.K.S.Ng
compound source
Molecule: Pavine N-Methyltransferase
Chain: A, B
Synonym: Pfpavnmt
Ec: 2.1.1.300
Engineered: Yes
Mutation: Yes
Organism_scientific: Thalictrum Flavum Subsp. Glaucum
Organism_common: Yellow Meadow Rue
Organism_taxid: 150095
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsetc
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.220 71.740 96.310 90.00 98.96 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SAM enzyme Transferase E.C.2.1.1.300 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and Functional Studies of Pavine N-Methyltransferase from Thalictrum flavum Reveal Novel Insights into Substrate Recognition and Catalytic Mechanism., Torres MA, Hoffarth E, Eugenio L, Savtchouk J, Chen X, Morris J, Facchini PJ, Ng KK, J Biol Chem. 2016 Aug 29. pii: jbc.M116.747261. PMID:27573242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (5kpc.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 5KPC
  • CSU: Contacts of Structural Units for 5KPC
  • Structure Factors (478 Kb)
  • Retrieve 5KPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KPC from S2C, [Save to disk]
  • Re-refined 5kpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KPC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kpc] [5kpc_A] [5kpc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KPC
  • Community annotation for 5KPC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science