5KUT Hydrolase date Jul 13, 2016
title Hmiro2 C-Terminal Gtpase Domain, Gdp-Bound
authors J.L.Klosowiak, P.J.Focia, S.E.Rice, D.M.Freymann
compound source
Molecule: Mitochondrial Rho Gtpase 2
Chain: A, B, C
Fragment: C-Terminal Gtpase Domain (Unp Residues 409-588)
Synonym: Hmiro-2, Ras Homolog Gene Family Member T2
Ec: 3.6.5.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhot2, Arht2, C16orf39
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.218 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.610 122.760 103.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand GDP, MG enzyme Hydrolase E.C.3.6.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5kut.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (5kut.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (5kut.pdb3.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 5KUT
  • CSU: Contacts of Structural Units for 5KUT
  • Structure Factors (1200 Kb)
  • Retrieve 5KUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KUT from S2C, [Save to disk]
  • Re-refined 5kut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KUT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kut_C] [5kut_B] [5kut_A] [5kut]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KUT
  • Community annotation for 5KUT at PDBWiki (http://pdbwiki.org)

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