5L3X Transcription date May 24, 2016
title Crystal Structure Of Negative Elongation Factor Subcomplex N
authors D.Poellmann, S.M.Vos, P.Cramer
compound source
Molecule: Negative Elongation Factor A
Chain: A
Synonym: Nelf-A,Wolf-Hirschhorn Syndrome Candidate 2 Protei
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nelfa, Whsc2, Pokcl.15
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a

Molecule: Negative Elongation Factor Cd
Chain: B
Synonym: Nelf-Cd,Th1-Like Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nelfcd, Nelfd, Th1, Th1l, Hspc130
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21b
symmetry Space Group: I 21 3
R_factor 0.237 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
185.070 185.070 185.070 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceArchitecture and RNA binding of the human negative elongation factor., Vos SM, Pollmann D, Caizzi L, Hofmann KB, Rombaut P, Zimniak T, Herzog F, Cramer P, Elife. 2016 Jun 10;5. pii: e14981. doi: 10.7554/eLife.14981. PMID:27282391
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (5l3x.pdb1.gz) 578 Kb
  • LPC: Ligand-Protein Contacts for 5L3X
  • CSU: Contacts of Structural Units for 5L3X
  • Structure Factors (458 Kb)
  • Retrieve 5L3X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L3X from S2C, [Save to disk]
  • Re-refined 5l3x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L3X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L3X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l3x_A] [5l3x_B] [5l3x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L3X
  • Community annotation for 5L3X at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science