5L6M	Hydrolase	date	May 30, 2016
title	Structure Of Caulobacter Crescentus Vapbc1 (Vapb1deltac:Vapc
authors	K.L.Bendtsen, K.Xu, M.Luckmann, D.E.Brodersen
compound		source
Molecule: Vapb Family Protein Chain: A, D, E, H, I, L Engineered: Yes		Organism_scientific: Caulobacter Crescentus (Strain Atcc 19 Cb15); Organism_taxid: 190650 Strain: Atcc 19089 Cb15 Gene: Cc_0032 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Ribonuclease Vapc Chain: B, C, F, G, J, K Synonym: Rnase Vapc,Toxin Vapc Ec: 3.1.-.- Engineered: Yes		Organism_scientific: Caulobacter Crescentus (Strain Atcc 19 Cb15); Organism_taxid: 190650 Strain: Atcc 19089 Cb15 Gene: Vapc, Cc_0031 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: C 1 2 1	R_factor 0.196 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.400 63.600 184.700 90.00 94.10 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	GOL, MLI	enzyme	Hydrolase E.C.3.1 BRENDA
Gene	CC ; CC
Gene Ontology	Chain Function Process Component A, E, H, D, I, L F, J, K, B, C, G nuclease activity ribonuclease activity toxin activity
Primary reference	Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding., Bendtsen KL, Xu K, Luckmann M, Winther KS, Shah SA, Pedersen CN, Brodersen DE, Nucleic Acids Res. 2016 Dec 19. pii: gkw1266. doi: 10.1093/nar/gkw1266. PMID:27998932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk] Biological Unit Coordinates (5l6m.pdb1.gz) 258 Kb Biological Unit Coordinates (5l6m.pdb2.gz) 261 Kb LPC: Ligand-Protein Contacts for 5L6M CSU: Contacts of Structural Units for 5L6M Structure Factors (1592 Kb) Retrieve 5L6M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5L6M from S2C, [Save to disk] Re-refined 5l6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5l6m_I] [5l6m_L] [5l6m_F] [5l6m_B] [5l6m_C] [5l6m] [5l6m_J] [5l6m_G] [5l6m_E] [5l6m_H] [5l6m_A] [5l6m_D] [5l6m_K] SWISS-PROT database: Domain organization of by SWISSPFAM

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