5L78 Oxidoreductase date Jun 02, 2016
title Crystal Structure Of Human Aminoadipate Semialdehyde Synthas Saccharopine Dehydrogenase Domain (In Nad+ Bound Form)
authors J.Kopec, I.A.Pena, E.Rembeza, C.Strain-Damerell, R.Chalk, O.Borko S.Goubin, S.Velupillai, N.Burgess-Brown, C.Arrowsmith, A.Edward C.Bountra, P.Arruda, W.W.Yue
compound source
Molecule: Alpha-Aminoadipic Semialdehyde Synthase, Mitochon
Chain: A, B
Fragment: Sdh Domain, Unp Residues 455-926
Synonym: Lkrsdh
Ec: 1.5.1.8,1.5.1.9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aass
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.222 86.633 149.924 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.68 Å
ligand EDO, NAD enzyme Oxidoreductase E.C.1.5.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (5l78.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 5L78
  • CSU: Contacts of Structural Units for 5L78
  • Structure Factors (1885 Kb)
  • Retrieve 5L78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L78 from S2C, [Save to disk]
  • Re-refined 5l78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L78
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l78_A] [5l78] [5l78_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L78
  • Community annotation for 5L78 at PDBWiki (http://pdbwiki.org)

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