5LF9 Transferase date Jun 30, 2016
title Crystal Structure Of Human Nudt22
authors C.Tallant, P.Siejka, S.Mathea, L.Shrestha, T.Krojer, V.Srikannath J.M.Elkins, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.E C.Bountra, K.Huber, Structural Genomics Consortium (Sgc)
compound source
Molecule: Nucleoside Diphosphate-Linked Moiety X Motif 22
Chain: A
Synonym: Nudix Motif 22
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt22, Pp11246
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.810 52.114 101.783 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (5lf9.pdb1.gz) 93 Kb
  • CSU: Contacts of Structural Units for 5LF9
  • Structure Factors (1006 Kb)
  • Retrieve 5LF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LF9 from S2C, [Save to disk]
  • Re-refined 5lf9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LF9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lf9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LF9
  • Community annotation for 5LF9 at PDBWiki (http://pdbwiki.org)

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