5LIH Transferase date Jul 14, 2016
title Structure Of A Peptide-Substrate Bound To Pkciota Core Kinas
authors E.V.Soriano, A.G.Purkiss, N.Q.Mcdonald
compound source
Molecule: Protein Kinase C Iota Type
Chain: A, B
Synonym: Atypical Protein Kinase C-Lambdaiota,Apkc-Lambda Iota;
Ec: 2.7.11.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkci, Dxs1179e
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector: Unidentified Baculovirus

Molecule: Pkc Epsilon Pseudo Substrate Sequence
Chain: F, G
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.257 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.980 84.230 111.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.25 Å
ligand ADP, AF3, MN, SCN, TPO enzyme Transferase E.C.2.7.11.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceaPKC Inhibition by Par3 CR3 Flanking Regions Controls Substrate Access and Underpins Apical-Junctional Polarization., Soriano EV, Ivanova ME, Fletcher G, Riou P, Knowles PP, Barnouin K, Purkiss A, Kostelecky B, Saiu P, Linch M, Elbediwy A, Kjaer S, O'Reilly N, Snijders AP, Parker PJ, Thompson BJ, McDonald NQ, Dev Cell. 2016 Aug 22;38(4):384-98. doi: 10.1016/j.devcel.2016.07.018. PMID:27554858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (5lih.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (5lih.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 5LIH
  • CSU: Contacts of Structural Units for 5LIH
  • Structure Factors (249 Kb)
  • Retrieve 5LIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LIH from S2C, [Save to disk]
  • Re-refined 5lih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LIH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lih from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lih_B] [5lih_F] [5lih_G] [5lih_A] [5lih]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5LIH: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 5LIH
  • Community annotation for 5LIH at PDBWiki (http://pdbwiki.org)

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