5LJO Membrane Protein date Jul 19, 2016
title E. Coli Bam Complex (Bamabcde) By Cryoem
authors M.G.Iadanza, N.A.Ranson, S.E.Radford, A.J.Higgins, B.Schffrin, A.N.Calabrese, A.E.Ashcroft, D.J.Brockwell
compound source
Molecule: Outer Membrane Protein Assembly Factor Bamb
Chain: B
Engineered: Yes
 Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Gene: Bamb, Yfgl, B2512, Jw2496
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Outer Membrane Protein Assembly Factor Bamc
Chain: C
Engineered: Yes
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Gene: Bamc, Dapx, Nlpb, B2477, Jw2462
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Outer Membrane Protein Assembly Factor Bamd
Chain: D
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Bamd, Yfio, Z3889, Ecs3458
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Outer Membrane Protein Assembly Factor Bame
Chain: E
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Bame, Smpa, C3139
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Outer Membrane Protein Assembly Factor Bama
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Bama, Yaet, Ecs88_0187
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.90 Å
Gene ECS88
Gene
Ontology
ChainFunctionProcessComponent
A


B


D


E


Primary referenceLateral opening in the intact beta-barrel assembly machinery captured by cryo-EM., Iadanza MG, Higgins AJ, Schiffrin B, Calabrese AN, Brockwell DJ, Ashcroft AE, Radford SE, Ranson NA, Nat Commun. 2016 Sep 30;7:12865. doi: 10.1038/ncomms12865. PMID:27686148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk]
  • Biological Unit Coordinates (5ljo.pdb1.gz) 429 Kb
  • CSU: Contacts of Structural Units for 5LJO
  • Retrieve 5LJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LJO from S2C, [Save to disk]
    • View 5LJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LJO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ljo_E] [5ljo] [5ljo_B] [5ljo_C] [5ljo_A] [5ljo_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LJO: [PQQ ] by SMART
    • Other resources with information on 5LJO
  • Community annotation for 5LJO at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science