5LKM Dna Binding Protein date Jul 22, 2016
title Rada Bound To Dtdp
authors C.Rapisarda, H.Remaut, R.Fornzes
compound source
Molecule: Dna Repair Protein Rada
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Strain: R800
Gene: Rada, Ers022181_02072
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: I 2 2 2
R_factor 0.183 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.400 169.900 187.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand MG, TYD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (373 Kb) [Save to disk]
  • Biological Unit Coordinates (5lkm.pdb1.gz) 725 Kb
  • LPC: Ligand-Protein Contacts for 5LKM
  • CSU: Contacts of Structural Units for 5LKM
  • Structure Factors (510 Kb)
  • Retrieve 5LKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LKM from S2C, [Save to disk]
  • Re-refined 5lkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LKM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lkm_A] [5lkm_C] [5lkm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LKM
  • Community annotation for 5LKM at PDBWiki (http://pdbwiki.org)

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