5LTA Protein Rna date Sep 06, 2016
title Crystal Structure Of The Prp43-Adp-Bef3-U7-Rna Complex
authors M.J.Tauchert, R.Ficner
compound source
Molecule: Pre-Mrna-Splicing Factor Atp-Dependent Rna Helica
Chain: A
Ec: 3.6.4.13
Engineered: Yes
Other_details: The Protein Was Expressed With 2 Additional Amino Acids (Ma) And A C-Terminal Strep-Tag (Wshpqfek);
Organism_scientific: Chaetomium Thermophilum Var. Thermophi 1495;
Organism_taxid: 759272
Gene: Ctht_0005780
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_vector: Petm-13

Molecule: Rna (5'-R(Pupupupupupupupu)-3')
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 61 2 2
R_factor 0.197 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.392 106.392 356.698 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.62 Å
ligand ADP, BEF, CAC, MG enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene CTHT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the mechanism of the DEAH-box RNA helicase Prp43., Tauchert MJ, Fourmann JB, Luhrmann R, Ficner R, Elife. 2017 Jan 16;6. pii: e21510. doi: 10.7554/eLife.21510. PMID:28092261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (5lta.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 5LTA
  • CSU: Contacts of Structural Units for 5LTA
  • Structure Factors (320 Kb)
  • Retrieve 5LTA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LTA from S2C, [Save to disk]
  • Re-refined 5lta structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LTA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LTA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lta_E] [5lta_A] [5lta]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LTA
  • Community annotation for 5LTA at PDBWiki (http://pdbwiki.org)

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